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A.2 Functions from ICA Toolbox binica.m Matlab function to interface stannd alone binary version ICA (excutable by C) binica.sc cbar.m eegfilt.m floatread.m floatwrite.m icadefs.m sbplot.m scale.m textsc.m
A.3 Functions from SPM’99 Toolbox mip.mat template file for maximal intensity projection (MIP) display render_single_subj.mat
3D rendered brain template from single subject to render the resulting ROA maps
render_smooth_average.mat 3D rendered brain template from smoothed averaged brain to render the resulting ROA maps
render_spm96.map 3D rendered brain template from SPM96 to render the resulting ROA maps
spm_affsub3.m spm_atranspa.m spm_atrnaspa.mexlx spm_chi2_plot.m spm_conv_vol.m spm_conv_vol.mexlx spm_create_image.m spm_dctmtx.m spm_figure.m spm_get.m spm_get_space.m spm_global.m spm_global.mexlx
highest level subroutine involved in affine transformations Multiplies the transpose of a matrix by itself - a compiled routine mex file for spm_atranspa() in Linux.
display a plot showing convergence of an optimization routine convolves a mapped volume with a three dimensional separable function mex file for spm_conv_vol() in Linux create an image file
creates basis functions for Discrete Cosine Transform setup and callback functions for Graphics window user interface for filename selection
get or set the best guess for the space of the image
returns the global mean for a memory mapped volume image mex file for spm_global() in Linux
script file to keep initial values for ICA training showing color bar
(high|band|low)-pass filter fMRI time courses using two-way least-square FIR filtering (Signal Processing Toolbox needed) read floating-point binary data from a file write floating-point binary data into a file define ICA defaults
create axes in arbitrary subplot grid positions and sizes
scales an image such that its lowest value attains newMin and its highest value attains newMax
print text at the specified location in Matlab figure
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spm_hread.m spm_hwrite.m spm_list_files.m spm_list_files.mexlx spm.m
spm_matrix.m spm_platform.m spm_project.m spm_project.mexlx spm_sample_vol.m spm_sample_vol.mexlx spm_slice_vol.m spm_slice_vol.mexlx spm_smooth.m spm_str_manip.m spm_type.m spm_unlink.m spm_unlink.mexlx spm_vol_ecat7.m spm_vol.m
spm_vol_minc.m spm_write_plane.m spm_write_sn.m T1.hdr T1.img
reads a header of ANALYZE formatted image write a header of ANALYZE formatted image lists files and directories
mex file for spm_list_files() in Linux
Statistical Parametric Mapping (startup function) returns an affine transformation matrix
platform specific configuration parameters for SPM forms maximium intensity projections mex file for spm_project() in Linux
returns voxel values from a memory mapped image mex file for spm_sample_vol() in Linux
returns a slice through a memory mapped image mex file for spm_slice_vol() in Linux 3 dimensional convolution of an image miscellaneous string manipulation options
translates data type specifiers between SPM & Matlab representations routine for silently deleting files on disk mex file for spm_unlink() in Linux
get header information etc. for ECAT 7 images get header information etc for images
get header information etc. for MINC images write a transverse plane of image data write out normalized images
header file of SPM99 T1 template images image file of SPM99 T1 template images
A.4 Function from Supplement of SPM’99 Toolbox slice_overlay.m overlay functional map onto structural images in standard Talairach coordinates