Recognition factors et al.
Hphob. OMH / Sweet et al. Woods
Hphob. / Kyte & Doolittle et al.
Hphob. / Abraham & Leo Hphob. / Bull & Breese Hphob. / Eisenberg Hphob. / Hopp & Hphob. / Manavalan Hphob. / Black Hphob. / Fauchere et al.
Hphob. / Guy Hphob. / Miyazawa et al. Hphob. / Roseman Hphob. / Wolfenden et al. al
Hphob. HPLC / Wilson & al & al
Hphob. HPLC pH3.4 / Cowan Cowan
Hphob. / Rf mobility retention
HPLC / TFA retention tendency
HPLC / retention pH 2.1 7.4
% buried residues residues
Hphob. / Chothia Ratio hetero end/side Average flexibility Fasman
beta-sheet / Chou & Fasman Fasman
alpha-helix / Deleage & Roux& Roux
beta-turn / Deleage & Roux Roux
alpha-helix / Levitt beta-turn / Levitt
Hphob. / Janin Hphob. / Rao & Argos Hphob. / Tanford Hphob. / Welling & Hphob. HPLC / Parker Hphob. HPLC pH7.5 / HPLC / HFBA Transmembrane HPLC / retention pH % accessible Hphob. / Rose & al Average area buried alpha-helix / Chou & beta-turn / Chou & beta-sheet / Deleage Coil / Deleage & beta-sheet / Levitt Total beta-strand
Antiparallel beta-strand A.A. composition Prot
Relative mutability
9 Parallel beta-strand A.A. comp. in Swiss-
Window size: Relative weight of the window edges compared to the window center (in %): Weight variation model (if the relative weight at the edges is < 100%): linear exponential
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Selection of endpoints on the sequence OPSD_BOVIN (P02699)
Rhodopsin
Bos taurus (Bovine).
Please select one of the following features by clicking on a pair of endpoints, and the computation will be carried out for the corresponding sequence fragment. By default, the complete sequence is used.
Note: Only the features corresponding to subsequences of at least 18 residues are highlighted.
FT CHAIN 1-348 Rhodopsin. FT TOPO_DOM 1-36 Extracellular. FT TRANSMEM 37-63 Helical; Name=1. FT TOPO_DOM 64-73 Cytoplasmic. FT TRANSMEM 74-96 Helical; Name=2. FT TOPO_DOM 97-110 Extracellular. FT TRANSMEM 111-133 Helical; Name=3.
FT TOPO_DOM 134-152 Cytoplasmic. FT TRANSMEM 153-173 Helical; Name=4. FT TOPO_DOM 174-202 Extracellular. FT TRANSMEM 203-224 Helical; Name=5. FT TOPO_DOM 225-249 Cytoplasmic. FT TRANSMEM 250-274 Helical; Name=6. FT TOPO_DOM 275-286 Extracellular. FT TRANSMEM 287-308 Helical; Name=7. FT TOPO_DOM FT REGION 113-125 Retinal chromophore binding.
FT REGION 207-212 Retinal chromophore binding.
FT MOTIF 134-137 'Ionic lock' involved in activated form
FT STRAND 3-5 FT STRAND 10-13 FT HELIX 15-17 FT TURN 23-25 FT TURN 29-31 FT HELIX FT HELIX 66-68 FT HELIX FT HELIX 91-100 FT HELIX 103-105 FT HELIX FT STRAND 143-145 FT HELIX FT HELIX 170-172 FT TURN 175-177 FT STRAND 179-181 FT TURN 182-185 FT STRAND 186-188 FT HELIX 192-195 FT HELIX 196-198 FT HELIX 200-210 FT HELIX 213-223 FT TURN 224-228 FT TURN 229-231
309-34834-6471-89106-139150-168 Cytoplasmic.
FT TURN 235-238 FT STRAND 239-241 FT HELIX 242-277 FT TURN 278-280 FT HELIX 285-294 FT HELIX 295-299 FT HELIX 301-308 FT HELIX 311-321 FT TURN 322-324 FT TURN 328-330 FT STRAND 332-334 FT STRAND 336-338 FT STRAND 339-342
Or, if you wish to select a different sequence fragment (at least 18 amino acids long), you can enter the desired endpoints on the
sequence here (by default, the computation will be carried out for the complete sequence). N-terminal: C-terminal: The sequence OPSD_BOVIN consists of 348 amino acids.
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OPSD_BOVIN (P02699)
Rhodopsin
Bos taurus (Bovine).
The computation has been carried out on the complete sequence (348 amino acids).
SEQUENCE LENGTH: 348
Using the scale Hphob. / Kyte & Doolittle, the individual values for the 20 amino acids are:
Ala: 1.800 Arg: -4.500 Asn: -3.500 Asp: -3.500 Cys: 2.500 Gln: -3.500
Glu: -3.500 Gly: -0.400 His: -3.200 Ile: 4.500 Leu: 3.800 Lys: -3.900
Met: 1.900 Phe: 2.800 Pro: -1.600 Ser: -0.800 Thr: -0.700 Trp: -0.900
Tyr: -1.300 Val: 4.200 : -3.500 : -3.500 : -0.490 Weights for window positions 1,..,9, using linear weight variation model: 1 2 3 4 5 6 7 8 9 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 edge center edge The results of your ProtScale query are available in the following formats: ? ? ? ?
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