山东农业大学学士学位论文
Score E Sequences producing significant alignments: (bits) Value
GLRG_00584 | Colletotrichum graminicola M1.001 RNA polymerase Rp... 96 4e-019
>GLRG_00584 | Colletotrichum graminicola M1.001 RNA polymerase Rpb1 (5376 nt) Length = 5376
Score = 95.6 bits (48), Expect = 4e-019
Identities = 215/268 (80%), Gaps = 2/268 (0%) Strand = Plus / Plus
Query: 909 aagggcaaggatggtcgtctccgtggaaacttgatgggcaaacgtgtagatttctccgca 968 Sbjct: 1090 aagggcaaggagggccgtcttcgtggcaacctgatgggaaagcgtgtcgacttctcggcg 1149 *********** ** ***** ***** *** ******* ** ***** ** ***** ** Query: 969 cgtactgtcattactggtgatcccaacctggatctggacgaagtcggtgttccgcgatcc 1028 Sbjct: 1150 cgcactgttatcactggcgatgccaacctttctctcgatgaagtcggcgtgccccgaagt 1209 ** ***** ** ***** *** ******* *** ** ******** * ** *** Query: 1029 attgctaggactttgacatatcccgagacggtcaccccgtacaacattgcgaag-ctcca 1087 Sbjct: 1210 atcgcaagaaccttaacctatccagagacggttactccgtacaacattg-gaagactcca 1268 ** ** ** ** ** ** ***** ******** ** ************* **** *****
Query: 1088 cgagctcgtcaagaacggccccaacgagcaccctggtgccaagtacatcattcgtgacga 1147 Sbjct: 1269 tgagcttgtacagaacggtcccaacgagcatccaggtgccaagtacgtcatccgtaccga 1328 ***** ** ******* *********** ** ************ **** **** ***
Query: 1148 tggcacgcgtatcgaccttcgtcaccac 1175 Sbjct: 1329 tggtacgagaattgaccttcgtcaccac 1356 *** *** * ** ***************
BLASTN 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), \
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山东农业大学学士学位论文
programs\
Query= gi|319976285|gb|HQ599375.1| Massaria vomitoria voucher WU 30606 translation elongation factor-1 alpha (EF1a) gene, partial sequence (1285 letters)
Database: WQ_denove
12,006 sequences; 18,561,777 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
GLRG_02486 | Colletotrichum graminicola M1.001 translation elong... 658 0.0
>GLRG_02486 | Colletotrichum graminicola M1.001 translation elongation factor EF-1 (1667 nt) Length = 1667
Score = 658 bits (332), Expect = 0.0
Identities = 699/823 (84%), Gaps = 3/823 (0%) Strand = Plus / Plus
Query: 466 cagacgcccccggtcaccgtgacttcatcaagaacatgatcacgggtacctcgcaggccg 525 Sbjct: 497 cagacgctcccggtcaccgtgacttcatcaagaacatgatcactggtacttcccaggccg 556 ******* *********************************** ***** ** ******* Query: 526 actgtgctattctcatcatcgccgctggaactggtgagttcgaagccggtatctccaagg 585 Sbjct: 557 actgcgccattctcatcattgctgccggcactggtgagttcgaggctggtatctccaagg 616 **** ** *********** ** ** ** ************** ** ************* Query: 586 atggccagacgcgtgagcacgccctgcttgcctacacgctcggtgtcaagcaactcatcg 645 Sbjct: 617 atggccagactcgtgagcacgctctgctcgcctacacccttggtgtcaagcagctcatcg 676 ********** *********** ***** ******** ** *********** ******* Query: 646 tcgccatcaacaagatggacaccaccaagtggtctgaggagcgttacaacgaaatcatca 705 Sbjct: 677 ttgccatcaacaagatggacaccaccaagtggtccgaggcccgttacgaggaaatcatca 736 * ******************************** **** ****** * **********
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山东农业大学学士学位论文
Query: 706 aggagacgtccaacttcatcaagaaggtcggctacaaccccaagaccgtccccttcgtcc 765 Sbjct: 737 aggagacctccaacttcatcaagaaggtcggctacaaccccaagaccgttgccttcgtcc 796 ************************************************* ********* Query: 766 ccatctccggcttcaacggtgacaacatgatcgatgcctcgagcaactgcccctggtaca 825 Sbjct: 797 ccatctccggtttccacggcgacaacatgcttgcccccaccaccaacgctccttggtaca 856 ********** *** **** ********* * * ** * * **** ** ******* Query: 826 agggctgggagaaggagaccaagac---caagtctactggtaagacgctcctggaggcca 882 Sbjct: 857 agggttgggagaaggagaccaaggccggcaagaccaccggcaagaccctgcttgaggcca 916 **** ****************** * **** * ** ** ***** ** ** ******* Query: 883 tcgacagcatcgaccccccgtcccgtccctctgacaagcccctccgtctgcccctccagg 942 Sbjct: 917 tcgactccatcgagcagcccaagcgcccgacagacaagcccctccgtcttcccctccagg 976 ***** ****** * ** ** ** * ***************** **********
Query: 943 atgtgtacaagatcggtggtattggcacggtccccgtcggccgtgtcgagactggtgtca 1002 Sbjct: 977 atgtctacaagatcggtggtattggcacagtgcccgtcggccgtatcgagactggtgtcc 1036 **** *********************** ** ************ **************
Query: 1003 tcaaggccggtatggtcgtcaccttcgcccccgctggtgtcaccacggaagtgaagtcgg 1062 Sbjct: 1037 tcaagcccggtatggtcgttaccttcgctccctccaacgtcaccactgaagtcaagtccg 1096 ***** ************* ******** *** * ******** ***** ***** *
Query: 1063 ttgagatgcaccacgagcagctcgtcgagggccttcccggtgataacgtcggcttcaacg 1122 Sbjct: 1097 tcgagatgcaccacgagcagctcactgagggtcttcccggtgacaacgttggtttcaacg 1156 * ********************* ***** *********** ***** ** *******
Query: 1123 tcaagaacgtctccgtcaaggagatccgccgtggtaacgttgccggtgactccaagcaag 1182 Sbjct: 1157 tgaagaacgtctccgtcaaggacattcgccgtggcaacgtcgccggtgactccaagaacg 1216 * ******************** ** ******** ***** *************** * *
Query: 1183 annnnnnnaagggctgcgagtctttcaacgcccaggtcattgtcctcaaccaccctggcc 1242 Sbjct: 1217 acccccctgccggcgctgcttccttcaacgcccaggtcatcgtccttaaccaccccggtc 1276 * *** * ** ***************** ***** ******** ** *
Query: 1243 aggtcggtgctggttacgctcccgtcttggattgccacactgc 1285 Sbjct: 1277 aggtcggtgctggctacgcccccgtcctcgactgccacactgc 1319 ************* ***** ****** * ** ***********
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山东农业大学学士学位论文
Score = 192 bits (97), Expect = 2e-048 Identities = 121/129 (93%) Strand = Plus / Plus
Query: 289 ggcaagggttcctttaagtacgcctgggtgctcgacaagctcaaggccgagcgtgagcgt 348 Sbjct: 272 ggcaagggttccttcaagtacgcgtgggttcttgacaagctcaaggccgagcgtgagcgt 331 ************** ******** ***** ** *************************** Query: 349 ggtatcaccatcgacattgccctctggaaattcgaaaccccgaagtactatgtcaccgtc 408 Sbjct: 332 ggtatcaccatcgacattgccctctggaagttcgagactcccaagtactatgtcaccgtc 391 ***************************** ***** ** ** ****************** Query: 409 attggtaag 417 Sbjct: 392 attggtaag 400 *********
BLASTN 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), \programs\
Query= gi|319976383|gb|HQ599466.1| Massaria vomitoria voucher WU 30606 RNA polymerase II second largest subunit (RPB2) gene, partial cds (1128 letters)
Database: WQ_denove
12,006 sequences; 18,561,777 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
GLRG_03562 | Colletotrichum graminicola M1.001 RNA polymerase Rp... 62 5e-009
22
山东农业大学学士学位论文
>GLRG_03562 | Colletotrichum graminicola M1.001 RNA polymerase Rpb2 (3893 nt) Length = 3893
Score = 61.9 bits (31), Expect = 5e-009 Identities = 115/143 (80%) Strand = Plus / Plus
Query: 271 acaaacacccctgtcggtcgtgacggcaagcttgcaaaaccccgccagttgcacaacact 330 Sbjct: 1576 acaaacacgcccatcggccgtgacggcaagctggcgaaacctcgacaactacacaacacc 1635 ******** ** **** ************** ** ***** ** ** * ******** Query: 331 cattggggcctggtgtgccccgcagagacaccagaaggacaagcctgcggcttggtgaag 390 Sbjct: 1636 cattggggattggtgtgccctgctgaaaccccggaaggtcaagcctgtggtctcgtcaag 1695 ******** ********** ** ** ** ** ***** ******** ** * ** *** Query: 391 aacctgtcattaatgtgctacgt 413 Sbjct: 1696 aacttgtcactcatgtgctacgt 1718 *** ***** * ***********
Database: WQ_denove
Posted date: May 14, 2013 9:53 AM Number of letters in database: 18,561,777 Number of sequences in database: 12,006
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 12006
Number of Hits to DB: 1,046,120 Number of extensions: 63626
Number of successful extensions: 5566
Number of sequences better than 1.0e-005: 7
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